Publications

This page contains publications that used the CASPULE pipeline or its associated analysis tooling.

If you used CASPULE in your work, please cite the following paper.

If you want to list your paper in the website, please open a pull reques on our github with the citation and link.

Articles

2025

• CASPULE: A computational tool to study sticker–spacer polymer condensates. (bioRxiv, 2025). Chattaraj, A.; Kanovich, D. S.; Ranganathan, S.; Shakhnovich, E. I. bioRxiv · PDF

• Separation of sticker–spacer energetics governs the coalescence of metastable condensates. (Biophysical Journal, 2025). Chattaraj, A.; Shakhnovich, E. I. DOI

2024

• Multi-condensate state as a functional strategy to optimize the cell signaling output. (Nature Communications, 2024). Chattaraj, A.; Shakhnovich, E. I. DOI

2020

• Dynamic metastable long-living droplets formed by sticker-spacer proteins. (eLife, 2020). Ranganathan, S.; Shakhnovich, E. I. DOI

For general background on sticker-spacer polymers

• Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions. (Annual Review of Biophysics, 2020). Choi, J-M.; Holehouse A. S.; Pappu R. V. DOI