Publications

This page contains publications that used the CASPULE pipeline or its associated analysis tooling.

If you used CASPULE in your work, please cite the following paper:

Chattaraj A, Kanovich DS, Ranganathan S, Shakhnovich EI (2026) CASPULE: A computational tool to study sticker spacer polymer condensates. PLoS Comput Biol 22(5): e1014282. https://doi.org/10.1371/journal.pcbi.1014282

If you want to list your paper in the website, please open a pull request on our github with the citation and link.

Articles

2026

  • CASPULE: A computational tool to study sticker spacer polymer condensates. (PLoS Computational Bioliogy, 2026). Chattaraj, A.; Kanovich, D.S.; Ranganathan, S.; Shakhnovich, E.I. DOI

2025

  • Separation of sticker–spacer energetics governs the coalescence of metastable condensates. (Biophysical Journal, 2025). Chattaraj, A.; Shakhnovich, E. I. DOI

2024

  • Multi-condensate state as a functional strategy to optimize the cell signaling output. (Nature Communications, 2024). Chattaraj, A.; Shakhnovich, E. I. DOI

2020

  • Dynamic metastable long-living droplets formed by sticker-spacer proteins. (eLife, 2020). Ranganathan, S.; Shakhnovich, E. I. DOI

For general background on sticker-spacer polymers

  • Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions. (Annual Review of Biophysics, 2020). Choi, J-M.; Holehouse A. S.; Pappu R. V. DOI